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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs9876781 1 rs13091785 chr3:48494098 TREX1 chr3:48501186-48509043:+ -0.29 -11.03 7.38E-27 Longevity
BRCA cis rs13098911 1 rs13092160 chr3:46254791 LARS2 chr3:45430075-45590328:+ -0.2 -3.75 0.000187 Celiac disease
BRCA cis rs13098911 1 rs13092160 chr3:46254791 SACM1L chr3:45730754-45786900:+ -0.17 -3.88 0.000109 Celiac disease
BRCA cis rs13098911 1 rs13095946 chr3:46253812 CCR5 chr3:46411633-46417690:+ -0.11 -4.37 1.38E-5 Celiac disease
BRCA cis rs7647973 1 rs13096474 chr3:49443081 AMT chr3:49454212-49460012:- -0.14 -4.9 1.11E-6 Menarche (age at onset)
BRCA cis rs7647973 1 rs13096474 chr3:49443081 CCDC36 chr3:49235861-49295537:+ -0.1 -3.66 0.000267 Menarche (age at onset)
BRCA cis rs7647973 1 rs13096474 chr3:49443081 NCKIPSD chr3:48711280-48723334:- -0.18 -4.51 7.21E-6 Menarche (age at onset)
BRCA cis rs7647973 1 rs13096474 chr3:49443081 P4HTM chr3:49027341-49044579:+ -0.09 -3.69 0.000232 Menarche (age at onset)
BRCA cis rs7647973 1 rs13096474 chr3:49443081 WDR6 chr3:49044637-49053386:+ 0.14 4.28 2.07E-5 Menarche (age at onset)
BRCA cis rs10935120 1 rs13096604 chr3:134250099 ANAPC13 chr3:134196547-134204865:- -0.41 -13.25 3.28E-37 Height
BRCA cis rs10935120 1 rs13096604 chr3:134250099 CEP63 chr3:134204575-134293852:+ -0.14 -3.79 0.000158 Height
BRCA cis rs910316 1 rs13099 chr14:75599155 EIF2B2 chr14:75469612-75476292:+ -0.18 -5.1 4.12E-7 Height
BRCA cis rs910316 1 rs13099 chr14:75599155 MLH3 chr14:75480467-75518235:- -0.22 -6.88 1.03E-11 Height
BRCA cis rs7692995 1 rs13104111 chr4:17935045 NCAPG chr4:17812525-17846485:+ 0.11 4.47 8.8E-6 Height
BRCA cis rs7692995 1 rs13105471 chr4:17959776 NCAPG chr4:17812525-17846485:+ 0.09 4.18 3.1E-5 Height